Since I'm switching to a GSXR I have some parts for a 2004-2006 R1 to get rid of.  I have a Guhl methanol injection system with velocity stacks and airbox for $650, power commander 3 $125, 3 cut wiring harnesses $75 each, manual timing chain tensioner $40, stock gas injection system $100, stock ECU $50, stock airbox $25.  Also have counter sprockets, some brand new $15 ea.  Will update with what I have sprocket wise when I get home Wednesday night, otherwise message me if you are looking for something specific and I will have my wife check to see if we have it.  Probably have some other stuff laying around I can't remember at the moment.  If you need it ask and I will check.
Engine itself has a lot of good parts on it as well.  I messed up installing the timing chain tensioner and it slipped and hit the intake valves in 3 places at idle so 99% of the engine is still in great shape.  If you are interested in any parts or the whole thing, let me know and we can negotiate something.
All prices have a bit of wiggle room to them.  Best route of communication is PM on the site or email 
mcinturff.racing@gmail.com